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This toolkit consists of a collection of libraries that can be used to run basic
sequence analysis tasks. Routines for global alignment (LCS from Fragments, Edit
Distance with Gaps), local alignment (approximata string matching with K mismateches or differences), and statistical analysis (Filter, Z-Score and Model Generation ) are included.
The routines are available in the form of C libraries and Perl modules.
Moreover, a Perl/Tk graphical user interface is provided. If BioPerl (version 1.5.2) is installed, the GUI takes
advantage of its sequence parsing capabilities.
User Manual download: click here.
Reference: Raffaele Giancarlo, Alessandro Siragusa , Enrico Siragusa and Filippo Utro: A basic analysis toolkit for biological sequences. Algorithms for Molecular Biology 2007, 2:10.
All the software is released under the GNU General Public License.
In particular, it comes with no warranty whatsoever and it is ditributed as is.
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