This toolkit consists of a collection of libraries that can be used to run basic sequence analysis tasks. Routines for global alignment (LCS from Fragments, Edit Distance with Gaps), local alignment (approximata string matching with K mismateches or differences), and statistical analysis (Filter, Z-Score and Model Generation ) are included.

The routines are available in the form of C libraries and Perl modules. Moreover, a Perl/Tk graphical user interface is provided. If BioPerl (version 1.5.2) is installed, the GUI takes advantage of its sequence parsing capabilities.

User Manual download: click here.

Reference: Raffaele Giancarlo, Alessandro Siragusa , Enrico Siragusa and Filippo Utro: A basic analysis toolkit for biological sequences. Algorithms for Molecular Biology 2007, 2:10.

All the software is released under the GNU General Public License. In particular, it comes with no warranty whatsoever and it is ditributed as is.




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